miRBase entry: ppc-mir-2261

Stem-loop ppc-mir-2261


Accession
MI0011187
Description
Pristionchus pacificus ppc-mir-2261 precursor miRNA


Sequence

cguugcuguuauucguucaccguuggcuaaacucagagcacucgugcagUUUGGCAACUCAUGAACGAAUGacggcuccgg
((..(((((((((((((((..((((.(((((((((((....)).)).)))))))))))...)))))))))))))))..)).

Structure
-  uu               -cc    g       -  -  g 
 cg  gcuguuauucguuca   guug cuaaacu ca ga c
 ||  |||||||||||||||   |||| ||||||| || ||  
 gc  cggcaGUAAGCAAGU   CAAC GGUUUga gu cu a
g  cu               ACU    -       c  g  c 


Annotation confidence Not enough data
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Genome context
ABKE03000015.1: 215648-215728 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-2261
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2261

Accession MIMAT0011687
Description Pristionchus pacificus ppc-miR-2261 mature miRNA
Sequence 50 - UUUGGCAACUCAUGAACGAAUG - 71
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074