miRBase entry: ppc-mir-2262

Stem-loop ppc-mir-2262


Accession
MI0011188
Description
Pristionchus pacificus ppc-mir-2262 precursor miRNA


Sequence

gaauaaauguuuugacccucgaaugacgagUACCCGAUGUCCAGUGGUACCUUcuguauugagaagaaggacuccuuuacaucgggcaccugucaaugaguagcguuaauucu
((((.((((((......((((..(((((.((.((((((((..((.(((.((((((.........))))))))).))..)))))))).)).))))).)))).)))))).)))).

Structure
-    a      uugacc    aa     a  A        CC  U   A      gua 
 gaau aauguu      cucg  ugacg gU CCCGAUGU  AG GGU CCUUcu   u
 |||| ||||||      ||||  ||||| || ||||||||  || ||| ||||||   u
 cuua uugcga      gagu  acugu ca gggcuaca  uc uca ggaaga   g
u    a      -----u    -a     c  c        uu  c   -      aga 


Annotation confidence Not enough data
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Genome context
ABKE03000005.1: 1337907-1338019 [-]

Database links

Mature ppc-miR-2262

Accession MIMAT0011688
Description Pristionchus pacificus ppc-miR-2262 mature miRNA
Sequence 31 - UACCCGAUGUCCAGUGGUACCUU - 53
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074