miRBase entry: ppc-mir-2240b

Stem-loop ppc-mir-2240b


Accession
MI0011189
Description
Pristionchus pacificus ppc-mir-2240b precursor miRNA
Gene family
MIPF0000838; mir-2240


Sequence

uacucgcaacgucccuuaucuucugaaaucucuguuucgaucacuaauuggagugaUCCCAGGGAUUCUCAGUAGAUUagggcaucgagu
.(((((....(.((((.((((.((((((((((((....(((((((......))))))).)))))))).)))).)))).)))))..)))))

Structure
u     caac u    u    u    -        uuuc       aa 
 acucg    g cccu aucu cuga aaucucug    gaucacu  u
 |||||    | |||| |||| |||| ||||||||    |||||||   
 ugagc    c ggga UAGA GACU UUAGGGAC    CUaguga  u
-     --ua -    U    U    C        ---C       gg 


Annotation confidence Not enough data
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Genome context
ABKE03000048.1: 536132-536221 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-2240b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2240b

Accession MIMAT0011689
Description Pristionchus pacificus ppc-miR-2240b mature miRNA
Sequence 57 - UCCCAGGGAUUCUCAGUAGAUU - 78
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074