miRBase entry: ppc-mir-2240a-1

Stem-loop ppc-mir-2240a-1


Accession
MI0011190
Description
Pristionchus pacificus ppc-mir-2240a-1 precursor miRNA
Gene family
MIPF0000838; mir-2240


Sequence

gcuacucgcaacgucccuuaucuucugaaauccagguuucgaucacuaauuggugugaUCACCGGGAUUCUCAGUGGAUUagggcaucgagucagcu
((((((((....(.((((.((((.(((((((((.(((...((((((........))))))))).))))).)))).)))).)))))..))))).))).

Structure
-   -     caac u    u    u    -     a   uuc      uaa 
 gcu acucg    g cccu aucu cuga aaucc ggu   gaucac   u
 ||| |||||    | |||| |||| |||| ||||| |||   ||||||    
 cga ugagc    c ggga UAGG GACU UUAGG CCA   CUagug   u
u   c     --ua -    U    U    C     G   ---      ugg 


Annotation confidence Not enough data
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Genome context
ABKE03000048.1: 536003-536099 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ppc-mir-2240a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2240a

Accession MIMAT0011690
Description Pristionchus pacificus ppc-miR-2240a mature miRNA
Sequence 59 - UCACCGGGAUUCUCAGUGGAUU - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074