Stem-loop ppc-mir-2240c

Accession

MI0011192

Description

Pristionchus pacificus ppc-mir-2240c precursor miRNA

Gene family

MIPF0000838; mir-2240

Sequence

gguacccuuugcaacucgcuacgucccuuaucuucugaaaucucuguuucgaucacuaauuggugugaUCCCAGGGAUUCUCAGUGGAUUagggcaucgagucagcuccauuccc
..........((.(((((....(.((((.((((.((((((((((((....((((((........)))))).)))))))).)))).)))).)))))..)))))..)).........

Structure

gguacccuuu  -a     cuac u    u    u    -        uuuc      uaa 
          gc  acucg    g cccu aucu cuga aaucucug    gaucac   u
          ||  |||||    | |||| |||| |||| ||||||||    ||||||    
          cg  ugagc    c ggga UAGG GACU UUAGGGAC    CUagug   u
-cccuuaccu  ac     --ua -    U    U    C        ---C      ugg 

Annotation confidence Not enough data

Genome context

ABKE03000048.1: 535739-535853 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppc-mir-2240c

Mature ppc-miR-2240c

• Accession: MIMAT0011691
• Description: Pristionchus pacificus ppc-miR-2240c mature miRNA
• Sequence: 69 - UCCCAGGGAUUCUCAGUGGAUU - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074