Stem-loop ppc-mir-2238a-1

Accession

MI0011193

Description

Pristionchus pacificus ppc-mir-2238a-1 precursor miRNA

Gene family

MIPF0000822; mir-2238

Sequence

cgguuuaugguaacuagucauuccucuuucccuuuucacucaucucgucaaucgauaauugaauuucgAAUGACAGAUCAGUGCGCGAGaaggaagacuagcuuccguaauacacugg
((((((((((...((((((.(((((.((((......((((.((((.((((.((((..........)))).)))))))).))))...)))))))))))))))...))))))...)))).

Structure

-    ---      uaa      a     c    ccuuuu    c    c    a    uaau 
 cggu   uuaugg   cuaguc uuccu uuuc      cacu aucu guca ucga    u
 ||||   ||||||   |||||| ||||| ||||      |||| |||| |||| ||||     
 guca   aaugcc   gaucag aagga aGAG      GUGA UAGA CAGU Agcu    g
g    cau      uuc      -     -    ---CGC    C    -    A    uuaa 

Annotation confidence Not enough data

Genome context

ABKE03000048.1: 448529-448646 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2238a-1

Mature ppc-miR-2238a

• Accession: MIMAT0011692
• Description: Pristionchus pacificus ppc-miR-2238a mature miRNA
• Sequence: 69 - AAUGACAGAUCAGUGCGCGAG - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074