Stem-loop sequence ppc-mir-2238a-1

Accession MI0011193
Description Pristionchus pacificus miR-2238a-1 stem-loop
Gene family MIPF0000822; mir-2238
Stem-loop 
-    ---      uaa      a     c    c uuuu    c    c    a    uaau 
 cggu   uuaugg   cuaguc uuccu uuuc c    cacu aucu guca ucga    u
 ||||   ||||||   |||||| ||||| |||| |    |||| |||| |||| ||||     
 guca   aaugcc   gaucag aagga agag g    guga uaga cagu agcu    g
g    cau      uuc      -     -    c ---c    c    -    a    uuaa
Get sequence
Deep sequencing
21 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig6: 719178-719295 [-]
intergenic

Mature sequence ppc-miR-2238a

Accession MIMAT0011692
Sequence

69 -  

aaugacagaucagugcgcgag

 - 89

Get sequence
Deep sequencing 79 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).