miRBase entry: ppc-mir-2238a-2

Stem-loop ppc-mir-2238a-2


Accession
MI0011194
Description
Pristionchus pacificus ppc-mir-2238a-2 precursor miRNA
Gene family
MIPF0000822; mir-2238


Sequence

uuauucugguaucuagucgauccucuuucccauucacucuucucgucagucgaugauugaauaucgAAUGACAGAUCAGUGCGCGAGaaggaagacuagcuuccgugaugg
.((((.(((...((((((..((((.((((.(...((((..(((.((((.((((((......)))))).)))))))..)))).).)))))))).))))))...))).)))).

Structure
u    c   uau      ga    c    c auu    cu   c    g      au 
 uauu ugg   cuaguc  uccu uuuc c   cacu  ucu guca ucgaug  u
 |||| |||   ||||||  |||| |||| |   ||||  ||| |||| ||||||   
 guag gcc   gaucag  agga aGAG G   GUGA  AGA CAGU Agcuau  g
g    u   uuc      -a    -    C --C    CU   -    A      aa 


Annotation confidence Not enough data
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Genome context
ABKE03000048.1: 28065-28175 [+]

Database links

Mature ppc-miR-2238a

Accession MIMAT0011692
Description Pristionchus pacificus ppc-miR-2238a mature miRNA
Sequence 67 - AAUGACAGAUCAGUGCGCGAG - 87
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074