miRBase entry: ppc-mir-2238a-3

Stem-loop ppc-mir-2238a-3


Accession
MI0011195
Description
Pristionchus pacificus ppc-mir-2238a-3 precursor miRNA
Gene family
MIPF0000822; mir-2238


Sequence

gguaacuagucgauccucuuucccguucacucuucucgucagucgaugauugaauaucgAAUGACAGAUCAGUGCGCGAGaaggaagacuagcuucc
((...((((((..((((...((.(((.((((..(((.((((.((((((......)))))).)))))))..)))).))).)))))).))))))...))

Structure
  uaa      ga    cuu  c   u    cu   c    g      au 
gg   cuaguc  uccu   uc cgu cacu  ucu guca ucgaug  u
||   ||||||  ||||   || ||| ||||  ||| |||| ||||||   
cc   gaucag  agga   aG GCG GUGA  AGA CAGU Agcuau  g
  uuc      -a    ---  A   C    CU   -    A      aa 


Annotation confidence Not enough data
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Genome context
ABKE03000093.1: 9309218-9309314 [+]

Database links

Mature ppc-miR-2238a

Accession MIMAT0011692
Description Pristionchus pacificus ppc-miR-2238a mature miRNA
Sequence 60 - AAUGACAGAUCAGUGCGCGAG - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074