Stem-loop ppc-mir-2238c

Accession

MI0011196

Description

Pristionchus pacificus ppc-mir-2238c precursor miRNA

Gene family

MIPF0000822; mir-2238

Sequence

uuaugauaccuagucgauccucuuucccguucacucuucucgucagucgaugaugaauuucgAAUGACAGAACAAGUGCGCGAGaaggaagacuagcuuccgugau
(((((..(.((((((..((((...((.(((.((((.((((.((((.((((.........)))).))))))))..)))).))).)))))).)))))).)..))))).

Structure

-     au c      ga    cuu  c   u    -c    c    g    uga 
 uuaug  a cuaguc  uccu   uc cgu cacu  uucu guca ucga   u
 |||||  | ||||||  ||||   || ||| ||||  |||| |||| ||||   g
 agugc  u gaucag  agga   aG GCG GUGA  AAGA CAGU Agcu   a
u     cu c      -a    ---  A   C    AC    -    A    uua 

Annotation confidence Not enough data

Genome context

ABKE03000093.1: 8986518-8986623 [+]

Mature ppc-miR-2238c

• Accession: MIMAT0011693
• Description: Pristionchus pacificus ppc-miR-2238c mature miRNA
• Sequence: 63 - AAUGACAGAACAAGUGCGCGAG - 84
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074