Stem-loop ppc-mir-234

Accession

MI0011197

Description

Pristionchus pacificus ppc-mir-234 precursor miRNA

Gene family

MIPF0000315; mir-234

Sequence

ccgauccucuccaaucccgcucacgcugggcauucuuuagugaauaacacguuugauacgaagaacugUUAUUGCUCAAGAAUGCCAAUcgugauggauaacgagggaggagcagg
((..((((((((.((((...(((((...(((((((((.(((.(((((((.((((........)))))))))))))).)))))))))...))))).))))...).)))))))...))

Structure

  -ga       - --a    cgc     cug         u   g       c    gau 
cc   uccucuc c   aucc   ucacg   ggcauucuu agu aauaaca guuu   a
||   ||||||| |   ||||   |||||   ||||||||| ||| ||||||| ||||    
gg   aggaggg g   uagg   agugc   CCGUAAGAA UCG UUAUUgu caag   c
  acg       a caa    --u     UAA         C   -       -    aag 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 7127338-7127453 [-]

Mature ppc-miR-234

• Accession: MIMAT0011694
• Description: Pristionchus pacificus ppc-miR-234 mature miRNA
• Sequence: 69 - UUAUUGCUCAAGAAUGCCAAU - 89
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074