miRBase entry: ppc-mir-54

Stem-loop ppc-mir-54


Accession
MI0011198
Description
Pristionchus pacificus ppc-mir-54 precursor miRNA


Sequence

agguuagcuguauuccuucucuacugccguccgaguuauuucauucgggucuaccuauugagaggcuaAACCCGUAAUGAUAAUAAUUCGCGcggcuugaggacggaucagcgagucuug
(((...((((.((((.(((((....(((((.(((((((((((((((((((.(((((......))).)).))))).))))).))))))))).)))))..))))).))))))))....))).

Structure
-   -uua    u    c     uacu     c         -     -     c  -   au 
 agg    gcug auuc uucuc    gccgu cgaguuauu ucauu cgggu ua ccu  u
 |||    |||| |||| |||||    ||||| ||||||||| ||||| ||||| || |||   
 uuc    cgac uagg aggag    cggcG GCUUAAUAA AGUAA GCCCA au gga  g
g   ugag    -    c     --uu     C         U     U     A  c   ga 


Annotation confidence Not enough data
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Genome context
ABKE03000107.1: 3735128-3735247 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-54
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-54

Accession MIMAT0011695
Description Pristionchus pacificus ppc-miR-54 mature miRNA
Sequence 69 - AACCCGUAAUGAUAAUAAUUCGCG - 92
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074