miRBase entry: ppc-mir-55b

Stem-loop ppc-mir-55b


Accession
MI0011199
Description
Pristionchus pacificus ppc-mir-55b precursor miRNA


Sequence

gcacagcuaaguuucgacguauaacgugcaggucgcccuauaugaaauggucgcAACCCGUAACGUUAUAUUUCGGaacucuugugagugca
((((.((..((((((((.(((((((((((.(((.((.((((.....))))..)).))).)).))))))))).))))))))...))..)))).

Structure
-    -a  -ua        c         -  a   c  -c    a 
 gcac  gc   aguuucga guauaacgu gc ggu gc  cuau u
 ||||  ||   |||||||| ||||||||| || ||| ||  |||| g
 cgug  ug   ucaaGGCU UAUAUUGCA UG CCA cg  ggua a
a    ag  uuc        U         A  C   A  cu    a 


Annotation confidence Not enough data
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Genome context
ABKE03000107.1: 3735291-3735382 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppc-mir-55b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-55b

Accession MIMAT0011696
Description Pristionchus pacificus ppc-miR-55b mature miRNA
Sequence 55 - AACCCGUAACGUUAUAUUUCGG - 76
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074