miRBase entry: ppc-mir-2263

Stem-loop ppc-mir-2263


Accession
MI0011200
Description
Pristionchus pacificus ppc-mir-2263 precursor miRNA


Sequence

gcuauucgccaugcccccauccucaaaaauuccgagaaccacgaauugaaugugGUCUCGGGCUUCUUUGAGGAUaagggcuucgggucagc
((((((((....((((..(((((((((((.(((((((.(((((.......)))))))))))).)).)))))))))..))))..))))).)))

Structure
   -     ccau    cc         -  u       a     aa 
gcu auucg    gccc  auccucaaa aa uccgaga ccacg  u
||| |||||    ||||  ||||||||| || ||||||| |||||  u
cga ugggc    cggg  UAGGAGUUU UU GGGCUCU Ggugu  g
   c     --uu    aa         C  C       -     aa 


Annotation confidence Not enough data
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Genome context
ABKE03000107.1: 3739758-3739849 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ppc-mir-2263
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2263

Accession MIMAT0011697
Description Pristionchus pacificus ppc-miR-2263 mature miRNA
Sequence 55 - GUCUCGGGCUUCUUUGAGGAU - 75
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074