miRBase entry: ppc-mir-2264

Stem-loop ppc-mir-2264


Accession
MI0011201
Description
Pristionchus pacificus ppc-mir-2264 precursor miRNA


Sequence

gcacaguccacgccgcgggUAUCACAGCGCACAACGGCGAUgagugucacuguacgaaauauccccggaugcgcacugugaagcccgcggauggaccacugc
(((..(((((..((((((((.((((((.((.((.(((.((((..(((......)))...)))).)))..)).)).)))))).)))))))).)))))...)))

Structure
   -ca     cg        A      C  A  -A   C    -ag   ca 
gca   gucca  ccgcgggU UCACAG GC CA  CGG GAUg   ugu  c
|||   |||||  |||||||| |||||| || ||  ||| ||||   |||   
cgu   caggu  ggcgcccg aguguc cg gu  gcc cuau   gca  u
   cac     -a        a      a  c  ag   c    aaa   ug 


Annotation confidence Not enough data
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Genome context
ABKE03000131.1: 545120-545221 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-2264
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2264

Accession MIMAT0011698
Description Pristionchus pacificus ppc-miR-2264 mature miRNA
Sequence 20 - UAUCACAGCGCACAACGGCGAU - 41
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074