Stem-loop ppc-mir-312a

Accession

MI0011208

Description

Pristionchus pacificus ppc-mir-312a precursor miRNA

Sequence

gugaccuaucauggcucucaccgccuccuugucgccaugcgugguaugaagcuuuucgUAUGGCACAUUGAGACGGAGaaagccaauagauucacg
((((.((((..(((((.((.(((.(((..(((.((((((((.(((.....)))...)))))))))))..))).))).)).)))))))))..)))).

Structure

-    -c    ca     c  a   c   cu   c        --u   a 
 guga  cuau  uggcu uc ccg cuc  ugu gccaugcg   ggu u
 ||||  ||||  ||||| || ||| |||  ||| ||||||||   ||| g
 cacu  gaua  accga aG GGC GAG  ACA CGGUAUgc   ucg a
g    ua    --     a  A   A   UU   -        uuu   a 

Annotation confidence Not enough data

Genome context

ABKE03000028.1: 1954281-1954376 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-312a

Mature ppc-miR-312a

• Accession: MIMAT0011705
• Description: Pristionchus pacificus ppc-miR-312a mature miRNA
• Sequence: 59 - UAUGGCACAUUGAGACGGAG - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074