miRBase entry: ppc-mir-2243

Stem-loop ppc-mir-2243

Accession

MI0011209

Description

Pristionchus pacificus ppc-mir-2243 precursor miRNA

Sequence

gcccucucgauacgcucccucauccacagaaauucguucucaucacgauucgaagugaUGAUAAUGAAUUCUUUGGAUGagagcucuugagucugc
((...(((((...((((..(((((((.((((.((((((.(((((((........))))))).)))))))))).)))))))))))..)))))...))

Structure

  ccu     uac    cc       c    a      c       gau 
gc   cucga   gcuc  ucaucca agaa uucguu ucaucac   u
||   |||||   ||||  ||||||| |||| |||||| |||||||    
cg   gaguu   cgag  aGUAGGU UCUU AAGUAA AGUagug   c
  ucu     -cu    --       U    -      U       aag

Annotation confidence Not enough data

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Genome context

ABKE03000012.1: 5532389-5532484 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2243

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppc-miR-2243

Accession	MIMAT0011706
Description	Pristionchus pacificus ppc-miR-2243 mature miRNA
Sequence	59 - UGAUAAUGAAUUCUUUGGAUG - 79
Evidence	experimental 454 [1]

References

PubMed ID: 19755563
Repertoire and evolution of miRNA genes in four divergent nematode species
"de Wit E, Linsen SE, Cuppen E, Berezikov E"
"Genome Res (2009) 19:2064-2074