Stem-loop ppc-mir-2242-1

Accession

MI0011210

Description

Pristionchus pacificus ppc-mir-2242-1 precursor miRNA

Gene family

MIPF0000945; mir-2242

Sequence

caagugacauagaagacugacuugcuaguguucucacucgcuuauuucauuccgacacaagaaaugugUUGGAAUGAAACGAGUGAGUCAGCaucaccgucuuuguaguguucaguug
(((.((((((.(((((((((..((((......((((((((....(((((((((((((((.....)))))))))))))))))))))))..)))))))..))))))...))).))).)))

Structure

   g   -   --a      --   cu    aguguu        cuua               a 
caa uga cau   gaagac  uga  ugcu      cucacucg    uuucauuccgacaca g
||| ||| |||   ||||||  |||  ||||      ||||||||    ||||||||||||||| a
guu acu gug   uuucug  acu  aCGA      GAGUGAGC    AAAGUAAGGUUgugu a
   g   u   aug      cc   --    ----CU        ----               a 

Annotation confidence Not enough data

Genome context

ABKE03000104.1: 775777-775894 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2242-1

Mature ppc-miR-2242

• Accession: MIMAT0011707
• Description: Pristionchus pacificus ppc-miR-2242 mature miRNA
• Sequence: 69 - UUGGAAUGAAACGAGUGAGUCAGC - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074