Stem-loop ppc-mir-2242-2

Accession

MI0011211

Description

Pristionchus pacificus ppc-mir-2242-2 precursor miRNA

Gene family

MIPF0000945; mir-2242

Sequence

caagugacauagcugaugaacuuuguaguguccucacucgcucauuucauuccgacacaagaaaugugUUGGAAUGAAACGAGUGAGUCAGCaucaccgucuuuguaguguucaguug
(((.((((((.((.((((.........(((..((.((((((((.(((((((((((((((.....))))))))))))))).)))))))).))...)))))))...)).))).))).)))

Structure

   g   -   a  --u    aacuuugua   -uc  c        a               a 
caa uga cau gc   gaug         gug   cu acucgcuc uuucauuccgacaca g
||| ||| ||| ||   ||||         |||   || |||||||| ||||||||||||||| a
guu acu gug ug   cugc         cac   GA UGAGUGAG AAAGUAAGGUUgugu a
   g   u   a  uuu    ---------   uaC  C        C               a 

Annotation confidence Not enough data

Genome context

ABKE03000104.1: 776047-776164 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2242-2

Mature ppc-miR-2242

• Accession: MIMAT0011707
• Description: Pristionchus pacificus ppc-miR-2242 mature miRNA
• Sequence: 69 - UUGGAAUGAAACGAGUGAGUCAGC - 92
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074