Stem-loop ppc-mir-2238d

Accession

MI0011213

Description

Pristionchus pacificus ppc-mir-2238d precursor miRNA

Gene family

MIPF0000822; mir-2238

Sequence

uuuaccgagcagucaauucccuuuucguucgcuccacaugucaaucguugauucgaguacgAAUGACAAGUGCAGAUGGCGAGaagguagacuccggugaac
(((((((.(.((((.....((((((((((..((.(((.(((((.((((..........)))).))))).))).))..))))))))))..)))))))))))).

Structure

-       a c    aauuc          cg  c   a     a    ugau 
 uuuaccg g aguc     ccuuuucguu  cu cac uguca ucgu    u
 ||||||| | ||||     ||||||||||  || ||| ||||| ||||     
 aaguggc c ucag     ggaaGAGCGG  GA GUG ACAGU Agca    c
c       - -    ---au          UA  C   A     A    ugag 

Annotation confidence Not enough data

Genome context

ABKE03000020.1: 187290-187391 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2238d

Mature ppc-miR-2238d

• Accession: MIMAT0011710
• Description: Pristionchus pacificus ppc-miR-2238d mature miRNA
• Sequence: 62 - AAUGACAAGUGCAGAUGGCGAG - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074