Stem-loop sequence ppc-mir-38

Accession MI0011218
Description Pristionchus pacificus miR-38 stem-loop
Stem-loop 
c     u     cu  u     -  a    g           a    ucca 
 uucga cugag  gg gccug cc caua ugacucccggu acca    u
 ||||| |||||  || ||||| || |||| ||||||||||| ||||    u
 aggcu gacuc  cc cggac gg guau auugagggcca uggu    c
-     -     --  -     a  -    a           c    ucag
Get sequence
Deep sequencing
5 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig89: 123474-123571 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-38
ppc-mir-38 Ppa_Contig89: 123474-123571 [+]
ppc-mir-42b Ppa_Contig89: 123598-123688 [+]

Mature sequence ppc-miR-38

Accession MIMAT0011714
Sequence

61 -  

ucaccgggaguuaauaugggac

 - 82

Get sequence
Deep sequencing 5 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).