Stem-loop ppc-mir-2250

Accession

MI0011219

Description

Pristionchus pacificus ppc-mir-2250 precursor miRNA

Sequence

ggaaaaugaagacagagcgcccuccuuguuuuacgcggucucucaucgauuagggaagugUGAGAUCGUGUAAAACCAGGAGagccaucuucugacuuccaaucc
(((....((((.(((((.((.(((((.(((((((((((((((.(((...........))).))))))))))))))).))))).))....))))).))))...)))

Structure

   aaau    a     ---c  c     u               u   cgau 
gga    gaag cagag    gc cuccu guuuuacgcggucuc cau    u
|||    |||| |||||    || ||||| ||||||||||||||| |||    a
ccu    cuuc gucuu    cg GAGGA CAAAAUGUGCUAGAG gug    g
   -aac    a     cuac  a     C               U   aagg 

Annotation confidence Not enough data

Genome context

ABKE03000123.1: 3623885-3623989 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppc-mir-2250

Mature ppc-miR-2250

• Accession: MIMAT0011715
• Description: Pristionchus pacificus ppc-miR-2250 mature miRNA
• Sequence: 61 - UGAGAUCGUGUAAAACCAGGAG - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074