miRBase entry: ppc-mir-55a

Stem-loop ppc-mir-55a


Accession
MI0011220
Description
Pristionchus pacificus ppc-mir-55a precursor miRNA


Sequence

augcucacucugaggggaguugccacuaggcagcaaugcuaacgaguguguugaucuuucguaucaucucaUACCCGUAAGCCAUUCUGUCGAGcggcucucuccauuccgagugaggau
((.(((((((.((((((((..(((.((.(((((.((((((.(((.(((((.(((((....).))))...))))).))).)).))))))))).)).))).))))))..)).))))))).))

Structure
  g       u  --      uu   a  a     c    -  a   a     --u    - u 
au cucacuc ga  ggggag  gcc cu ggcag aaug cu acg gugug   ugau c u
|| ||||||| ||  ||||||  ||| || ||||| |||| || ||| |||||   |||| |  
ua gagugag cu  ccucuc  cgg GA CUGUC UUAC GA UGC CAUac   acua g u
  g       c  ua      -u   c  G     -    C  A   C     ucu    u c 


Annotation confidence Not enough data
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Genome context
ABKE03000094.1: 1044747-1044866 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-55a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-55a

Accession MIMAT0011716
Description Pristionchus pacificus ppc-miR-55a mature miRNA
Sequence 72 - UACCCGUAAGCCAUUCUGUCGAG - 94
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074