miRBase entry: ppc-mir-993

Stem-loop ppc-mir-993


Accession
MI0011222
Description
Pristionchus pacificus ppc-mir-993 precursor miRNA


Sequence

gaucucucucccccuugggcuaaccauucugcccuguacagacgugcuuaucucugguauucuauaagcacgaGAAGCUCGACUCUACAGGUCagaacaggccuauucauacuuugauuu
((((...........((((((.....(((((.((((((.((.((.(((..((((((.(........).)).))))))).)).)).)))))).)))))..))))))..........)))).

Structure
-    ucucucccccu      aacca     c      c  a  u   ua    -  g auu 
 gauc           ugggcu     uucug ccugua ag cg gcu  ucuc ug u   c
 ||||           ||||||     ||||| |||||| || || |||  |||| || |    
 uuag           auccgg     aagaC GGACAU UC GC CGA  AGag ac a   u
u    -uuucauacuu      ---ac     U      C  A  U   --    c  g aua 


Annotation confidence Not enough data
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Genome context
ABKE03000122.1: 634088-634207 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppc-mir-993
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-993

Accession MIMAT0011718
Description Pristionchus pacificus ppc-miR-993 mature miRNA
Sequence 74 - GAAGCUCGACUCUACAGGUC - 93
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074