Stem-loop ppc-mir-2251a

Accession

MI0011225

Description

Pristionchus pacificus ppc-mir-2251a precursor miRNA

Gene family

MIPF0000838; mir-2240

Sequence

gcccgcuacucgacacgucccaaauccucaugaaucccgguuuugaucacuaguugcagugaUCACCGGGAUUCUAUGAAGAUCUgggcuucgagaaggc
....(((.(((((...(.((((.(((.((((((((((((((...(((((((......))))))))))))))))).)))).))).))))).)))))..)))

Structure

gccc   -a     cac u    a   c    -          uuu       ag 
    gcu  cucga   g ccca auc ucau gaaucccggu   gaucacu  u
    |||  |||||   | |||| ||| |||| ||||||||||   |||||||   
    cgg  gagcu   c gggU UAG AGUA CUUAGGGCCA   CUaguga  u
----   aa     --u -    C   A    U          ---       cg 

Annotation confidence Not enough data

Genome context

ABKE03000093.1: 9033595-9033694 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2251a

Mature ppc-miR-2251a

• Accession: MIMAT0011720
• Description: Pristionchus pacificus ppc-miR-2251a mature miRNA
• Sequence: 63 - UCACCGGGAUUCUAUGAAGAUCU - 85
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074