miRBase entry: ppc-mir-2239-1

Stem-loop ppc-mir-2239-1


Accession
MI0011232
Description
Pristionchus pacificus ppc-mir-2239-1 precursor miRNA
Gene family
MIPF0001073; mir-2239


Sequence

gcgagacgagagcgagcgucgccuaggucuuucccccgcugcgauucagaagacacgaaUGGCAGUGUAGGAAAUAUCUUacuaaaaucggcgaaaagcgugggcgucaguuugca
((((((((...(((....(((((.((((.(((((..((((((.((((.........)))).))))))..))))).))))..........)))))....)))...))))...)))).

Structure
-    ---    aga   agcg     ---------u    c     cc      g    aga 
 gcga   gacg   gcg    ucgcc          aggu uuucc  cgcugc auuc   a
 ||||   ||||   |||    |||||          |||| |||||  |||||| ||||   g
 cguu   cugc   ugc    agcgg          UCUA AAAGG  GUGACG Uaag   a
a    uga    ggg   gaaa     cuaaaaucaU    U     AU      G    cac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ABKE03000040.1: 506120-506235 [-]

Database links

Mature ppc-miR-2239

Accession MIMAT0011727
Description Pristionchus pacificus ppc-miR-2239 mature miRNA
Sequence 60 - UGGCAGUGUAGGAAAUAUCUU - 80
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074