Stem-loop sequence ppc-mir-2273

Accession MI0011235
Description Pristionchus pacificus miR-2273 stem-loop
Stem-loop 
u   ca    uu au           a c  c     c    cga       
 ucu  ucga  g  cgucucucgaa g gg acaug cauc   auuaca 
 |||  ||||  |  ||||||||||| | || ||||| ||||   ||||| u
 aga  agcu  c  guagagagcuu c cc uguac guag   uaguga 
a   ug    cu gc           g -  c     a    ---
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Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig21: 467940-468038 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2273
ppc-mir-2272 Ppa_Contig21: 467633-467750 [+]
ppc-mir-2273 Ppa_Contig21: 467940-468038 [+]
ppc-mir-2267 Ppa_Contig21: 468379-468493 [+]

Mature sequence ppc-miR-2273

Accession MIMAT0011730
Sequence

20 -  

ucucgaaagcggcacaugccaucc

 - 43

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Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).