Stem-loop sequence ppc-mir-2241a-3

Accession MI0011236
Description Pristionchus pacificus miR-2241a-3 stem-loop
Gene family MIPF0000821; mir-2241
Stem-loop 
-    acu   ---u  -      uauu           c    uc   guc       aga 
 ggag   agg    cu auucga    gccuugaucuu agga  ccu   ugaacac   a
 ||||   |||    || ||||||    ||||||||||| ||||  |||   |||||||   a
 cuuc   ucc    ga ugagcu    cgggacuagaa uccu  gga   gcuugug   u
c    auu   cuuc  c      ---u           c    ua   -ac       agu
Get sequence
Deep sequencing
14 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig25: 39974-40091 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2241a-3
ppc-mir-2241a-3 Ppa_Contig25: 39974-40091 [+]
ppc-mir-2241b-1 Ppa_Contig25: 40120-40216 [+]
ppc-mir-2241a-4 Ppa_Contig25: 40258-40354 [+]
ppc-mir-2241b-3 Ppa_Contig25: 40396-40492 [+]
ppc-mir-2241a-2 Ppa_Contig25: 40539-40626 [+]

Mature sequence ppc-miR-2241a

Accession MIMAT0011731
Sequence

67 -  

uucgcaaggauuccucaagauc

 - 88

Get sequence
Deep sequencing 35 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).