Stem-loop ppc-mir-2274

Accession

MI0011241

Description

Pristionchus pacificus ppc-mir-2274 precursor miRNA

Sequence

uggcugaguuuggcuacuccguugacugacgaggguauucacugauugcaaguugAACCCGUAGUCAAGUCUACGGAGcagccucucaagccaa
((((((((...((((.((((((.(((((((..((((..(((((.......)).)))))))...))).)))).)))))).)))).))).))))).

Structure

-     -   uuu    a      u    -   -ga    au   -  ga 
 uggcu gag   ggcu cuccgu gacu gac   gggu  uca cu  u
 ||||| |||   |||| |||||| |||| |||   ||||  ||| ||  u
 accga cuc   ccga GAGGCA CUGA CUG   CCCA  Agu ga  g
a     a   --u    c      U    A   AUG    --   u  ac 

Annotation confidence Not enough data

Genome context

ABKE03000007.1: 1081291-1081384 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppc-mir-2274

Mature ppc-miR-2274

• Accession: MIMAT0011733
• Description: Pristionchus pacificus ppc-miR-2274 mature miRNA
• Sequence: 56 - AACCCGUAGUCAAGUCUACGGAG - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074