miRBase entry: ppc-mir-279

Stem-loop ppc-mir-279


Accession
MI0011244
Description
Pristionchus pacificus ppc-mir-279 precursor miRNA
Gene family
MIPF0000184; mir-279

Literature search
1 open access papers mention ppc-mir-279
(4 sentences)

Sequence

augugcugugucguguucccugcuggguaugugucucagucaugcuauccuugucguuguacccaUGACUAGAUCCAUACUCAGCUgggcuuggcguugugcgu
((((((..(((((....(((.((((((((((.((((.(((((((.....(........)....))))))))))).)))))))))).)))..)))))..))))))

Structure
      ug     uguu   u          u    c       cuauc uug 
augugc  ugucg    ccc gcuggguaug gucu agucaug     c   u
||||||  |||||    ||| |||||||||| |||| |||||||     |    
ugcgug  gcggu    ggg CGACUCAUAC UAGA UCAGUac     g   c
      uu     --uc   U          C    -       -ccau uug 


Annotation confidence Not enough data
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Genome context
ABKE03000053.1: 567705-567808 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppc-mir-279
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-279

Accession MIMAT0011736
Description Pristionchus pacificus ppc-miR-279 mature miRNA
Sequence 66 - UGACUAGAUCCAUACUCAGCU - 86
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074