miRBase entry: ppc-mir-2241a-2

Stem-loop ppc-mir-2241a-2


Accession
MI0011247
Description
Pristionchus pacificus ppc-mir-2241a-2 precursor miRNA
Gene family
MIPF0000821; mir-2241


Sequence

auucgauacgccucugaucuucaggaucccugucugaacaucgaaauugagugUUCGCAAGGAUUCCUCAAGAUCagggccucgaauc
((((((...(((.((((((((.((((..(((...(((((((((....))).))))))..)))..)))).))))))))))).)))))).

Structure
-      uac   u        c    uc   guc      -   a 
 auucga   gcc cugaucuu agga  ccu   ugaaca ucg a
 ||||||   ||| |||||||| ||||  |||   |||||| |||  
 uaagcu   cgg gaCUAGAA UCCU  GGA   GCUUgu agu a
c      --c   -        C    UA   -AC      g   u 


Annotation confidence Not enough data
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Genome context
ABKE03000012.1: 4725593-4725680 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ppc-mir-2241a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppc-miR-2241a

Accession MIMAT0011731
Description Pristionchus pacificus ppc-miR-2241a mature miRNA
Sequence 54 - UUCGCAAGGAUUCCUCAAGAUC - 75
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074