Stem-loop ppc-mir-9

Accession

MI0011248

Description

Pristionchus pacificus ppc-mir-9 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

uuccuucaaugggacagucauuaucgucUCUUUGGUUAUCUAGCUGUAUGauuugaaauguaaaucauaaagcuggaaaacugaaggaacgaugugucucaugga
.(((....((((((((.....((((((.(((((((((.(((((((.(((((((((.....))))))))).))))))).))))))))).)))))))))))))))))

Structure

u   uuca        gucau      c         A       G         a 
 ucc    augggaca     uaucgu UCUUUGGUU UCUAGCU UAUGauuug a
 |||    ||||||||     |||||| ||||||||| ||||||| ||||||||| a
 agg    uacucugu     guagca ggaagucaa aggucga auacuaaau u
-   ----        -----      a         a       a         g 

Annotation confidence Not enough data

Genome context

ABKE03000043.1: 208379-208483 [+]

Mature ppc-miR-9

• Accession: MIMAT0011737
• Description: Pristionchus pacificus ppc-miR-9 mature miRNA
• Sequence: 29 - UCUUUGGUUAUCUAGCUGUAUG - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074