Stem-loop ppc-mir-2241c

Accession

MI0011249

Description

Pristionchus pacificus ppc-mir-2241c precursor miRNA

Gene family

MIPF0000821; mir-2241

Sequence

gcucuauucgauacgccucugaucuucaggaucccugucugaacacagaaauugagugUUCACAAGGUUUCCUCAAGAUCagggcuucgagucagcu
(((..((((((...(((.((((((((.((((..(((...(((((((.........)))))))..)))..)))).))))))))))).)))))).))).

Structure

-   cu      uac   u        c    uc   guc       aga 
 gcu  auucga   gcc cugaucuu agga  ccu   ugaacac   a
 |||  ||||||   ||| |||||||| ||||  |||   |||||||   a
 cga  ugagcu   cgg gaCUAGAA UCCU  GGA   ACUUgug   u
u   -c      --u   -        C    UU   -AC       agu 

Annotation confidence Not enough data

Genome context

ABKE03000012.1: 4725036-4725132 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppc-mir-2241c

Mature ppc-miR-2241c

• Accession: MIMAT0011738
• Description: Pristionchus pacificus ppc-miR-2241c mature miRNA
• Sequence: 59 - UUCACAAGGUUUCCUCAAGAUC - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074