miRBase entry: osa-MIR2118a

Stem-loop osa-MIR2118a


Accession
MI0011251
Description
Oryza sativa osa-MIR2118a precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
29 open access papers mention osa-MIR2118a
(169 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
gggaagaggaagaaagagaggcuccaagaguaguaggacugggaacauaugagaaagcaugagcucuauccaucuauccauccccucccauucgcuagaauguugcagguggagauuucgcucuuauguuUUCUCGAUGCCUCCCAUUCCUAucguucuuggaacuuccuuccucuucc
.(((((((((((.....((((.((((((((..((((((.(((((.(((.(((((((((((((((...(((......((((((......(((((....))))).....)))))))))...))))..))))))))))))))..))))).))))))..)))))))).)))))))))))))))

Structure
g           aaaga    c        ua      c     -a   a           --    ucu   caucua      cccucc     g 
 ggaagaggaag     gagg uccaagag  guagga uggga  cau ugagaaagcau  gagc   auc      uccauc      cauuc c
 |||||||||||     |||| ||||||||  |||||| |||||  ||| |||||||||||  ||||   |||      ||||||      |||||  
 ccuucuccuuc     cuuc agguucuu  uAUCCU ACCCU  GUA GCUCUUuugua  cucg   uag      aggugg      guaag u
-           -----    a        gc      U     CC   -           uu    cuu   ------      -acguu     a 


Annotation confidence Not enough data
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Genome context
Chr4: 21642923-21643101 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from osa-MIR2118a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2118a

Accession MIMAT0011740
Description Oryza sativa osa-miR2118a mature miRNA
Sequence 131 - UUCUCGAUGCCUCCCAUUCCUA - 152
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440