miRBase entry: osa-MIR2118m

Stem-loop osa-MIR2118m


Accession
MI0011263
Description
Oryza sativa osa-MIR2118m precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
28 open access papers mention osa-MIR2118m
(164 sentences)

Sequence

31 reads, 1 reads per million, 2 experiments
ggugagccaggaagaggauagagacucuaagagcaguaggaaugggaacaugaaggaaagccaaaccaagcucuaacuccuggaguuggagauuugguauaacgauuUUCCUGAUGCCUCCCAUUCCUAcaguucuuagguccuuguuccucuuacuuucggcuaacacc
((((((((((((((((((..(((((.((((((((.((((((((((((.(((..((((((((...(((((((((((((((...))))))))).)))))).....).))))))).)))..)))))))))))).)))))))))).)))..))))))).)))..))))..))))

Structure
    --    --   -       ua   -  u        a            -a   ga       - --caa      -         c 
ggug  agcc  agg aagagga  gag ac cuaagagc guaggaauggga  cau  aggaaag c     accaag cucuaacuc  
||||  ||||  ||| |||||||  ||| || |||||||| ||||||||||||  |||  ||||||| |     |||||| ||||||||| u
ccac  ucgg  uuc uucuccu  uuc ug gauucuug cAUCCUUACCCU  GUA  UCCUUuu g     ugguuu gagguugag  
    aa    cu   a       ug   c  -        a            CC   -G       a caaua      a         g 


Annotation confidence Not enough data
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Genome context
Chr4: 21658851-21659020 [-]
Clustered miRNAs
10 other miRNAs are < 10 kb from osa-MIR2118m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2118m

Accession MIMAT0011752
Description Oryza sativa osa-miR2118m mature miRNA
Sequence 108 - UUCCUGAUGCCUCCCAUUCCUA - 129
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440