Stem-loop sequence osa-MIR2118n

Accession MI0011264
Description Oryza sativa miR2118n stem-loop
Gene family MIPF0000745; MIR2118
Stem-loop 
      ---c             aagag  a  c       a            -a   -  ag       uaa             u      g 
gugagc    aggaagaggaaga     ag gc uaagagc gugggaauggga  cau gg  gaaagcc   aaaccaaauuucu ccucca c
||||||    |||||||||||||     || || ||||||| ||||||||||||  ||| ||  |||||||   ||||||||||||| ||||||  
cgcucg    uccuucuccuucu     uc cg auucuug uauccuuacccu  gua cc  uuuuugg   uuugguuuaaagg ggaggu a
      acuu             -----  a  a       c            cc   g  cu       ---             u      a
Get sequence
Deep sequencing
24 reads, 2 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 21661494-21661672 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR2118n
osa-MIR2118n Chr4: 21661494-21661672 [-]
osa-MIR2118o Chr4: 21661272-21661426 [-]
osa-MIR2118m Chr4: 21658851-21659020 [-]
osa-MIR2118k Chr4: 21656944-21657120 [-]
osa-MIR2118l Chr4: 21656708-21656884 [-]
osa-MIR2118j Chr4: 21654594-21654764 [-]
osa-MIR2118h Chr4: 21652652-21652808 [-]
osa-MIR2118i Chr4: 21652388-21652568 [-]

Mature sequence osa-miR2118n

Accession MIMAT0011753
Sequence

120 -  

uucccgaugccucccauuccua

 - 141

Get sequence
Deep sequencing 3 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).