Stem-loop sequence osa-MIR2118n

Accession

MI0011264 (change log)

Description

Oryza sativa miR2118n stem-loop

Gene family

MIPF0000745; MIR2118

Literature search

28 open access papers mention osa-MIR2118n
(166 sentences)

Stem-loop

         ---c             aagag  a  c       a            -a   -  ag       uaa             u      g 
5' gugagc    aggaagaggaaga     ag gc uaagagc gugggaauggga  cau gg  gaaagcc   aaaccaaauuucu ccucca c
   ||||||    |||||||||||||     || || ||||||| ||||||||||||  ||| ||  |||||||   ||||||||||||| ||||||  
3' cgcucg    uccuucuccuucu     uc cg auucuug uauccuuacccu  gua cc  uuuuugg   uuugguuuaaagg ggaggu a
         acuu             -----  a  a       c            cc   g  cu       ---             u      a 

Deep sequencing

7 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 21661494-21661672 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR2118n

• osa-MIR2118n: Chr4: 21661494-21661672 [-]
• osa-MIR2118o: Chr4: 21661272-21661426 [-]
• osa-MIR2118m: Chr4: 21658851-21659020 [-]
• osa-MIR2118k: Chr4: 21656944-21657120 [-]
• osa-MIR2118l: Chr4: 21656708-21656884 [-]
• osa-MIR2118j: Chr4: 21654594-21654764 [-]
• osa-MIR2118h: Chr4: 21652652-21652808 [-]
• osa-MIR2118i: Chr4: 21652388-21652568 [-]

Database links

• miRBase Tracker:MI0011264

Mature sequence osa-miR2118n

• Accession: MIMAT0011753
• Sequence: 120 - uucccgaugccucccauuccua - 141
• Evidence: experimental; 454 [1]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).