miRBase entry: osa-MIR2275b

Stem-loop osa-MIR2275b


Accession
MI0011270
Description
Oryza sativa osa-MIR2275b precursor miRNA
Gene family
MIPF0000797; MIR2275

Literature search
14 open access papers mention osa-MIR2275b
(75 sentences)

Sequence

uggcagcugaauuugagguuuggaugggaccaaaucuuacugcagacuugcagagcaagacaagaUUUGGUUUCCUCCAAUAUCUCAuguucaguuguca
((((((((((((.(((((((((((.(((((((((((((.(((((....)))))........))))))))))))).))))).)))))).))))))))))))

Structure
            u      -     u             -------a     g 
uggcagcugaau ugaggu uugga gggaccaaaucuu        cugca a
|||||||||||| |||||| ||||| |||||||||||||        |||||  
acuguugacuug ACUCUA AACCU CUUUGGUUUagaa        gacgu c
            u      U     C             cagaacga     u 


Annotation confidence Not enough data
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Genome context
Chr8: 1202490-1202589 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR2275b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR2275b

Accession MIMAT0011759
Description Oryza sativa osa-miR2275b mature miRNA
Sequence 66 - UUUGGUUUCCUCCAAUAUCUCA - 87
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440