miRBase entry: zma-MIR2118a

Stem-loop zma-MIR2118a


Accession
MI0011271
Description
Zea mays zma-MIR2118a precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
11 open access papers mention zma-MIR2118a
(13 sentences)

Sequence

50 reads, 971 reads per million, 12 experiments
ccuaagggcaguagggaugagaacaugaaggaacgcgagugcucugaauuucucgucucgcacggaggacaugugcacugucgugUUCCUGAUGCCUCUCAUUCCUAugguucuuagg
(((((((((.((((((((((((.(((..((((((((((((((.(((...(((((..........))))))).).))))..)))))))))).)))..)))))))))))).)))))))))

Structure
         a            -a   ga          --    u -  aau     gucu 
ccuaagggc guagggaugaga  cau  aggaacgcga  gugc c ug   uucuc    c
||||||||| ||||||||||||  |||  ||||||||||  |||| | ||   |||||     
ggauucuug uAUCCUUACUCU  GUA  UCCUUgugcu  cacg g ac   aggag    g
         g            CC   -G          gu    u u  ---     gcac 


Annotation confidence Not enough data
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Genome context
chr10: 118790595-118790712 [-]

Database links

Mature zma-miR2118a

Accession MIMAT0011760
Description Zea mays zma-miR2118a mature miRNA
Sequence 86 - UUCCUGAUGCCUCUCAUUCCUA - 107
Evidence experimental
454 [1]

References

  1. PubMed ID: 19584097
    Clusters and superclusters of phased small RNAs in the developing inflorescence of rice
    "Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH"
    "Genome Res (2009) 19:1429-1440