Stem-loop sequence zma-MIR2118c

Accession

MI0011273 (change log)

Description

Zea mays miR2118c stem-loop

Gene family

MIPF0000745; MIR2118

Literature search

11 open access papers mention zma-MIR2118c
(13 sentences)

Stem-loop

    g         uaaa   g          a     c      -a   gg        - --u       u 
5' g aagaggaag    gau aucuaagagc guggg auggga  cau  aggaaggc c   augaggu g
   | |||||||||    ||| |||||||||| ||||| ||||||  |||  |||||||| |   |||||||  
3' c uucuccuuc    cua uggauucuug uaucc uacccu  gua  uccuucug g   uacucca a
    g         ----   g          c     u      cc   -a        u uuu       a 

Deep sequencing

98 reads, 610 reads per million, 29 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr10: 118813614-118813746 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011273

Mature sequence zma-miR2118c

• Accession: MIMAT0011762
• Sequence: 85 - uuccuaaugccucccauuccua - 106
• Deep sequencing: 11 reads, 6 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).