Stem-loop sequence zma-MIR2118d

Accession

MI0011274 (change log)

Description

Zea mays miR2118d stem-loop

Gene family

MIPF0000745; MIR2118

Literature search

12 open access papers mention zma-MIR2118d
(14 sentences)

Stem-loop

         ---au g         a   g      g   a            aca  -g          ---      g 
5' gugagc     g aagaggaag gag gucuaa agc gugggcauggga   cg  aggaaggccu   augagu g
   ||||||     | ||||||||| ||| |||||| ||| ||||||||||||   ||  ||||||||||   |||||| a
3' cacucg     c uucuccuuc cuc uggauu uug uauccguacccu   gu  uccuucuggg   uacucg a
         guuuu g         -   g      g   c            -cc  ag          uuu      a 

Deep sequencing

232 reads, 268 reads per million, 139 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr2: 51343097-51343244 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR2118d

• zma-MIR2118b: chr2: 51342905-51343022 [+]
• zma-MIR2118d: chr2: 51343097-51343244 [+]

Database links

• miRBase Tracker:MI0011274

Mature sequence zma-miR2118d

• Accession: MIMAT0011763
• Sequence: 89 - uuccugaugccucccaugccua - 110
• Deep sequencing: 37 reads, 13 experiments
• Evidence: not experimental

References

1. PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).