Stem-loop sequence zma-MIR2275b

Accession MI0011279
Description Zea mays miR2275b stem-loop
Gene family MIPF0000797; MIR2275
Stem-loop 
    c   ag     -        c         --au  u 
ccau uga  ugagg auuagagg aacugaacc    ca c
|||| |||  ||||| |||||||| |||||||||    || u
ggua gcu  acucu uaaucucc uugacuugg    gu a
    a   cu     a        u         aaac  u
Get sequence
Comments

The mature product from the 5' arm of the hairpin dominates over the 3' arm, but the conservation signature with rice suggests that the 3' arm may be functional [1].

Genome context
Coordinates (RefGen_v2) Overlapping transcripts
chr4: 30201689-30201770 [+]
intergenic
Clustered miRNAs
< 10kb from zma-MIR2275b
zma-MIR2275a chr4: 30201533-30201654 [+]
zma-MIR2275b chr4: 30201689-30201770 [+]

Mature sequence zma-miR2275b-5p

Accession MIMAT0011769
Sequence

13 -  

aggauuagaggcaacugaacc

 - 33

Get sequence
Evidence experimental; 454 [1]

Mature sequence zma-miR2275b-3p

Accession MIMAT0011770
Sequence

51 -  

uucaguuuccucuaauaucuca

 - 72

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).