Stem-loop bna-MIR2111b

Accession

MI0011287

Description

Brassica napus bna-MIR2111b precursor miRNA

Gene family

MIPF0000754; MIR2111

Literature search

3 open access papers mention bna-MIR2111b
(3 sentences)

Sequence

gcacuugaugaggaacuggUAAUCUGCAUCCUGAGGUUUAaaaauacauaggcacaugcaaauguguguauuauaguuuuuaAUCCUCGGGAUACAGAUUACCucuuccuuuuacugaa
.........((((((..(((((((((.(((((((((.((((((((..(((.((((((....)))))).)))....)))))))).))))))))).)))))))))..))))))........

Structure

gcacuugau      cu         C         U        --ac   g      g 
         gaggaa  ggUAAUCUG AUCCUGAGG UUAaaaau    aua gcacau c
         ||||||  ||||||||| ||||||||| ||||||||    ||| ||||||  
         uuccuu  CCAUUAGAC UAGGGCUCC Aauuuuug    uau ugugua a
-aagucauu      cu         A         U        auau   g      a 

Annotation confidence Not enough data

Genome context

EM:BH986382: 375-493 [+]

Mature bna-miR2111b-5p

• Accession: MIMAT0011780
• Description: Brassica napus bna-miR2111b-5p mature miRNA
• Sequence: 20 - UAAUCUGCAUCCUGAGGUUUA - 40
• Evidence: not_experimental

Mature bna-miR2111b-3p

• Accession: MIMAT0011781
• Description: Brassica napus bna-miR2111b-3p mature miRNA
• Sequence: 83 - AUCCUCGGGAUACAGAUUACC - 103
• Evidence: not_experimental

References

1. PubMed ID: 19465578
   Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
   "Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR"
   "Plant Physiol (2009) 150:1541-1555