miRBase entry: bta-mir-2300a

Stem-loop bta-mir-2300a


Accession
MI0011310
Description
Bos taurus bta-mir-2300a precursor miRNA
Gene family
MIPF0000770; mir-2300

Literature search
1 open access papers mention bta-mir-2300a
(1 sentences)

Sequence

70 reads, 1 reads per million, 33 experiments
caucuuauUCCUCAGCUAGUUUUGUCUCCCugugugugaucauaagcagggaggcaaaacuagcuaaggaauaagaug
((((((((((((.(((((((((((((((((((((((....)))..)))))))))))))))))))).))))))))))))

Structure
            C                    --   u 
caucuuauUCCU AGCUAGUUUUGUCUCCCugu  gug g
|||||||||||| ||||||||||||||||||||  |||  
guagaauaagga ucgaucaaaacggagggacg  uac a
            a                    aa   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 31918144-31918221 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2300a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2300a-5p

Accession MIMAT0011809
Description Bos taurus bta-miR-2300a-5p mature miRNA
Sequence 9 - UCCUCAGCUAGUUUUGUCUCCC - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349