miRBase entry: bta-mir-2284j

Stem-loop bta-mir-2284j


Accession
MI0011328
Description
Bos taurus bta-mir-2284j precursor miRNA
Gene family
MIPF0000747; mir-2284

Literature search
14 open access papers mention bta-mir-2284j
(35 sentences)

Sequence

122 reads, 12 reads per million, 5 experiments
guuggugggccGAAAAGUUCGUUCAGGUUUUccaaguuacagaauaacccagacaaacuguuuggccagcccaau
...(((.(((((((.((((.(((..(((((((.........))).))))..))).)))).))))))).)))....

Structure
-guu   g       A    C   CA    -   caa 
    ggu ggccGAA AGUU GUU  GGUU UUc   g
    ||| ||||||| |||| |||  |||| |||   u
    ccg ccgguuu ucaa cag  ccaa aag   u
uaac   a       g    a   ac    u   aca 


Annotation confidence Not enough data
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Genome context
chr15: 32231535-32231609 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-2284j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2284j

Accession MIMAT0011827
Description Bos taurus bta-miR-2284j mature miRNA
Sequence 12 - GAAAAGUUCGUUCAGGUUUU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349