Stem-loop sequence bta-mir-2284k

Accession

MI0011400 (change log)

Description

Bos taurus miR-2284k stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284k
(32 sentences)

Stem-loop

     u  a       a    ggucg       cug  aca 
5' ag ug ccagaaa guuc     gguuuuu   ca   u
   || || ||||||| ||||     |||||||   ||    
3' uc ac gguuuuu caag     ccaaaaa   gu   c
     c  c       -    -aaaa       --a  aau 

Deep sequencing

62114 reads, 373 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr21: 70380569-70380642 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR2284K
• miRBase Tracker:MI0011400

Mature sequence bta-miR-2284k

• Accession: MIMAT0011907
• Sequence: 10 - gaaaaguucggucggguuuuu - 30
• Deep sequencing: 62095 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284k

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).