Stem-loop sequence bta-mir-2424

Accession

MI0011474 (change log)

Previous IDs

bta-mir-2424-1

Description

Bos taurus miR-2424 stem-loop

Literature search

1 open access papers mention bta-mir-2424
(1 sentences)

Stem-loop

   u    aggacu     ugugcugug    cu    ga  a 
5'  ccag      uagcc         gcca  gaga  ug a
    ||||      |||||         ||||  ||||  || a
3'  gguc      gucgg         uggu  uucu  ac c
   g    guaaac     -uagucuaa    --    ag  a 

Deep sequencing

238 reads, 0 reads per million, 62 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 104548335-104548414 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000062286 ; snoU85-201; exon 1

  ENSBTAT00000019603 ; NCAPD2-201; intron 4

Database links

• EntrezGene:MIR2424-1
• RNAcentral:URS000075CB37_9913
• miRBase Tracker:MI0011474

Mature sequence bta-miR-2424

• Accession: MIMAT0011993
• Sequence: 46 - agaucuuugguaaucugauggcu - 68
• Deep sequencing: 466 reads, 61 experiments
• Evidence: experimental

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).