Stem-loop sequence bta-mir-2443

Accession

MI0011496 (change log)

Description

Bos taurus miR-2443 stem-loop

Literature search

1 open access papers mention bta-mir-2443
(1 sentences)

Stem-loop

          uu     c   a   ua    --gu   ca 
5' gugaggg  gaggg agg ccg  ugag    guc  a
   |||||||  ||||| ||| |||  ||||    |||  g
3' cacuccc  cuccc ucc ggc  acuc    cgg  g
          --     u   c   cg    accu   aa 

Deep sequencing

1444 reads, 4.88 reads per million, 41 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr5: 117458061-117458133 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-2443

• bta-let-7a-3: chr5: 117457806-117457879 [+]
• bta-mir-2443: chr5: 117458061-117458133 [+]
• bta-let-7b: chr5: 117458606-117458686 [+]
• bta-mir-3596: chr5: 117458609-117458691 [-]

Database links

• EntrezGene:MIR2443
• RNAcentral:URS000075CD24_9913
• miRBase Tracker:MI0011496

Mature sequence bta-miR-2443

• Accession: MIMAT0012018
• Sequence: 9 - ugagggcaggaccguaugaggugu - 32
• Deep sequencing: 1443 reads, 41 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2443

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).