miRBase entry: bta-mir-2450c

Stem-loop bta-mir-2450c


Accession
MI0011504
Description
Bos taurus bta-mir-2450c precursor miRNA
Gene family
MIPF0000758; mir-2450

Literature search
1 open access papers mention bta-mir-2450c
(1 sentences)

Sequence

agaggcgcaugugccauuucugcacacucgguauagaugcgcgcaCACGUCAGUAGAGGCGCGUGUGccuuu
.((((((((((((((.((((((.((...(((((....))).)).....))))).))))))))))))))))).

Structure
a              a   -   c  --acu  -   u 
 gaggcgcaugugcc uuu cug ac     cg gua a
 |||||||||||||| ||| ||| ||     || |||  
 uuccGUGUGCGCGG AGA GAC UG     gc cgu g
u              -   U   -  CACac  g   a 


Annotation confidence Not enough data
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Genome context
chr6: 108174504-108174575 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bta-mir-2450c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2450c

Accession MIMAT0012028
Description Bos taurus bta-miR-2450c mature miRNA
Sequence 46 - CACGUCAGUAGAGGCGCGUGUG - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349