miRBase entry: bta-mir-2450a

Stem-loop bta-mir-2450a


Accession
MI0011506
Description
Bos taurus bta-mir-2450a precursor miRNA
Gene family
MIPF0000758; mir-2450

Literature search
1 open access papers mention bta-mir-2450a
(1 sentences)

Sequence

606 reads, 54 reads per million, 9 experiments
agaggcgcgugugccuuuucugcacacuugguauagacucgcacacaUGGGCAGUAGAGGUGCAUGUGccuuu
.(((((((((((((((((.((((.((..((((........)).))..)).)))).))))))))))))))))).

Structure
a                 u    a  cu  -  aua 
 gaggcgcgugugccuuu cugc ca  ug gu   g
 ||||||||||||||||| |||| ||  || ||    
 uuccGUGUACGUGGAGA GACG GU  ac cg   a
u                 U    G  ac  a  cuc 


Annotation confidence Not enough data
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Genome context
chr6: 108173591-108173663 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bta-mir-2450a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-2450a

Accession MIMAT0012030
Description Bos taurus bta-miR-2450a mature miRNA
Sequence 48 - UGGGCAGUAGAGGUGCAUGUG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349