Stem-loop sequence bta-mir-2284o

Accession

MI0011538 (change log)

Description

Bos taurus miR-2284o stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

13 open access papers mention bta-mir-2284o
(32 sentences)

Stem-loop

   u  ---            gg     u       
5'  gg   gaaaguucguuc  gguuu ccauag 
    ||   ||||||||||||  ||||| ||||| c
3'  cc   uuuucaagcaag  cuaag gguaua 
   a  ggu            -a     u       

Deep sequencing

550 reads, 23.1 reads per million, 39 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr9: 25596364-25596424 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR2284O
• miRBase Tracker:MI0011538

Mature sequence bta-miR-2284o

• Accession: MIMAT0012068
• Sequence: 5 - aaaguucguucgggguuuuc - 24
• Deep sequencing: 535 reads, 47 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2284o

References

1. PMID:19633723 "Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection" Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ PLoS One. 4:e6349(2009).