miRBase entry: hbv-mir-B20

Stem-loop hbv-mir-B20


Accession
MI0011557
Description
Herpes B virus hbv-mir-B20 precursor miRNA


Sequence

cgccggcggcggccgaGAGUGAGGGUGGCGAGCGCGUggacgcaccucccgacGUGCUGGUUGCCCGCGCUCUCGggcgcggccggacg
(((((((.(((.(((((((((.(((((((.((((((((((......)))..))))))).))))))).))))))))).))).))))).))

Structure
  -     g   g         A       G       --   cg 
cg ccggc gcg ccgaGAGUG GGGUGGC AGCGCGU  gga  c
|| ||||| ||| ||||||||| ||||||| |||||||  |||   
gc ggccg cgc gGCUCUCGC CCCGUUG UCGUGca  ccu  a
  a     g   g         G       G       gc   cc 


Annotation confidence Not enough data
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Genome context
NC_004812: 298-386 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from hbv-mir-B20
Name Accession Chromosome Start End Strand Confidence




Database links

Mature hbv-miR-B20-5p

Accession MIMAT0012172
Description Herpes B virus hbv-miR-B20-5p mature miRNA
Sequence 17 - GAGUGAGGGUGGCGAGCGCGU - 37
Evidence experimental
Northern [1], Illumina [2]

Mature hbv-miR-B20-3p

Accession MIMAT0031158
Description Herpes B virus hbv-miR-B20-3p mature miRNA
Sequence 54 - GUGCUGGUUGCCCGCGCUCUCG - 75
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19144716
    Discovery of herpes B virus-encoded microRNAs
    "Besecker MI, Harden ME, Li G, Wang XJ, Griffiths A"
    "J Virol (2009) 83:3413-3416

  2. PubMed ID: 21543500
    Identification and expression analysis of herpes B virus-encoded small RNAs
    "Amen MA, Griffiths A"
    "J Virol (2011) 85:7296-7311